CURRENT STATUS OF GRAIN DISCOLORATION DISEASE OF RICE IN PAKISTAN AND ITS MANAGEMENT
Keywords:
rice, disease resistance, discoloration, physiology, molecular breedingAbstract
Rice is an essential export and a staple food in Pakistan, but it also meets numerous challenges from diseases, such as rice grain discoloration, which is made worse by climate change. This situation challenges economic stability by affecting yield and quality due to a variety of biotic and abiotic causes. Temperature fluctuations, extreme humidity, and microbial diseases are all linked to discoloration. Effective management techniques have been investigated, emphasizing the contribution of silicon to improving plant resistance. These techniques include cultural practices, biological control, and chemical treatments. Inducing physiological changes and functioning as a mechanical barrier, silicon reduces the severity of disease. Additionally, the development of disease-resistant rice varieties is made possible by developments in molecular breeding and biotechnology, such as marker-assisted selection. The comprehensive review emphasizes the necessity of ongoing studies to lessen the effects of grain discoloration and enhance Pakistani rice production.
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Abbas, A., Arshad, A., Rehman, A. U., Bukhari, M. S., and Zaman, S. (2024a). Revolutionizing plant breeding programs with advancements in molecular marker-assisted selection. Bulletin of Biological and Allied Sciences Research 2024, 57.
Abbas, A., Rashad, A., Rehman, A. U., and Bukhari, M. S. (2024b). Exploring the response mechanisms of rice to salinity stress. Bulletin of Biological and Allied Sciences Research 2024, 58.
Abbas, A., Rehman, A., and Javed, M. (2021). Exploring the potential of in vitro tissue culture in breeding programs of legume and pulse crops: utilization and present condition. Bulletin of Biological and Allied Sciences Research 2021, 36-36.
Agarwal, P. C., Mortensen, C. N., and Mathur, S. B. (1989). Seed-borne diseases and seed health testing of rice.
Agrios, G. N. (2005). Plant pathology 5th edition: Elsevier academic press. Burlington, Ma. USA, 79-103.
Arshad, H. M. I., Khan, J. A., Naz, S., Khan, S. N., and Akram, M. (2009). Grain discoloration disease complex: a new threat for rice crop and its management. Pak. J. Phytopathol 21, 31-36.
Arunyanart, P., Surin, A., and Disthaporn, S. (1981). Seed discoloration disease and its chemical control.
Ashfaq, M., Ali, A., Siddique, S., Haider, M. S., Ali, M., Hussain, S. B., Mubashar, U., and Ali Khan, A. U. (2013). In-vitro Antibacterial Activity of Parthenium hysterophorus against Isolated Bacterial Species from Discolored Rice Grains. International Journal of Agriculture & Biology 15.
Ashfaq, M., Mubashar, U., Haider, M., Ali, M., Ali, A., and Sajjad, M. (2017a). Grain discoloration: an emerging threat to rice crop in Pakistan. JAPS: Journal of Animal & Plant Sciences 27.
Ashfaq, M., Mubashar, U., Haider, M. S., Ali, M., Ali, A., and Sajjad, M. (2017b). Grain discoloration: an emerging threat to rice crop in Pakistan. JAPS: Journal of Animal & Plant Sciences 27.
Atia, M. (2004). Rice false smut (Ustilaginoidea virens) in Egypt/Falscher Reisbrand (Ustilaginoidea virens) in Ägypten. Zeitschrift für Pflanzenkrankheiten und Pflanzenschutz/Journal of Plant Diseases and Protection, 71-82.
Azegami, K., Nishiyama, K., and Tabei, H. (1988). Infection courts of rice seedlings with Pseudomonas plantarii and Pseudomonas glumae. Japanese Journal of Phytopathology 54, 337-341.
Azegami, K., Nishiyama, K., Watanabe, Y., Suzuki, T., Yoshida, M., Nose, K., and Toda, S. (1985). Tropolone as a root growth-inhibitor produced by a plant pathogenic Pseudomonas sp. causing seedling blight of rice. Japanese Journal of Phytopathology 51, 315-317.
Bala, A., and Pannu, P. P. S. (2017). Status of seed discoloration of rice, mycofora associated and its impact on seed health and quality of farmer saved seeds. Seed Research 45, 131-135.
Bhuiyan, M. R., Rashid, M. M., Khan, M. A., Hoque, M., Nessa, B., Rafi, M. Y., and Latif, M. A. (2013). Eco-friendly management of seed borne fungi for sustainable crop production. Life Science Journal 10, 1640-1650.
Bodalkar, C., and Awadhiya, G. K. (2014). Assessment of percent grain discoloration in important rice varieties. Int J Curr Res Biosci Plant Biol 1, 61-64.
Boedijn, K. B. (1933). Ueber einige phragmosporen Dematiazeen. Bull. Jard. Bot. Buitenzorg (Ser. 3) 13, 120-134.
Butt, A. R., Yaseen, S. I., and Javaid, A. (2011). Seed-borne mycoflora of stored rice grains and its chemical control. J Anim Plant Sci 21, 193-196.
Chau Tan Phat, C. T. P., Nguyen Thi Duong, N. T. D., and Le Thi Du, L. T. D. (2005). Influence of grain discoloration to seed quality.
Chhabra, R., and Vij, L. (2020). Grain discoloration and its management: an emerging threat to paddy cultivation. Journal of Plant Diseases and Protection 127, 1-8.
Choudhary, G., Ranjitkumar, N., Surapaneni, M., Deborah, D. A., Vipparla, A., Anuradha, G., Siddiq, E. A., and Vemireddy, L. R. (2013). Molecular genetic diversity of major Indian rice cultivars over decadal periods. PloS one 8, e66197.
Collard, B. C. Y., and Mackill, D. J. (2008). Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Philosophical Transactions of the Royal Society B: Biological Sciences 363, 557-572.
Collard, B. C. Y., Vera Cruz, C. M., McNally, K. L., Virk, P. S., and Mackill, D. J. (2008). Rice molecular breeding laboratories in the genomics era: current status and future considerations. International journal of plant genomics 2008, 524847.
Cottyn, B., Cerez, M., Outryve, M. v., Barroga, J., Swings, J., and Mew, T. (1996). Bacterial diseases of rice. I. Pathogenic bacteria associated with sheath rot complex and grain discoloration of rice in the Philippines.
Cottyn, B., Regalado, E., Lanoot, B., De Cleene, M., Mew, T. W., and Swings, J. (2001). Bacterial populations associated with rice seed in the tropical environment. Phytopathology 91, 282-292.
Datnoff, L. E., Deren, C. W., and Snyder, G. H. (1997). Silicon fertilization for disease management of rice in Florida. Crop protection 16, 525-531.
Dye, D., Bradbury, J., Goto, M., Hayward, A., Lelliott, R., and Schroth, M. (1980). International standards for naming pathovars of phytopathogenic bacteria and a list of pathovar names and pathotype strains.
Fang, C.-t., Ken, H.-c., Chen, T.-y., Chu, Y.-k., Faan, H.-c., and Wu, S.-c. (1957). A comparison of the bice bacterial leaf blight organism with the bacterial leaf streak organisms of rice and Leersia hexandra Swartz.
Fatima, S., CHEEMA, K., Shafiq, M., Manzoor, M., Ali, Q., Haider, M., and Shahid, M. (2023). The genome-wide bioinformatics analysis of 1-aminocyclopropane-1-carboxylate synthase (acs), 1-aminocyclopropane-1-carboxylate oxidase (aco) and ethylene overproducer 1 (eto1) gene family of fragaria vesca (woodland strawberry). Bulletin of Biological and Allied Sciences Research 2023, 38-38.
Fitzgerald, M. A., McCouch, S. R., and Hall, R. D. (2009). Not just a grain of rice: the quest for quality. Trends in plant science 14, 133-139.
Ghazanfar, M. U., Nazir Javed, N. J., Waqas Wakil, W. W., and Iqbal, M. (2013). Screening of some fine and coarse rice varieties against bakanae disease.
Gupta, P. K., and Varshney, R. K. (2000). The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113, 163-185.
Hemmi, T., Seto, F., and Ikeya, J. (1931). Studies on the'bakanae'disease of the Rice plant. II. On the infection of Rice by Lisea fujikuroi Sawada and Gibberella saubinetii (Mont.) Sacc. in the flowering period.
Huang, X., Qian, Q., Liu, Z., Sun, H., He, S., Luo, D., Xia, G., Chu, C., Li, J., and Fu, X. (2009). Natural variation at the DEP1 locus enhances grain yield in rice. Nature genetics 41, 494-497.
Jabeen, R., Iftikhar, T., and Batool, H. (2012). Isolation, characterization, preservation and pathogenicity test of Xanthomonas oryzae pv. oryzae causing BLB disease in rice. Pak. J. Bot 44, 261-265.
Jain, S., Jain, R. K., and McCouch, S. R. (2004). Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers. Theoretical and Applied Genetics 109, 965-977.
Javed, M. M., Sami, A., Haider, M. Z., Abbas, A., Ali, M. H., Naeem, S., Amjad, M., Ahmad, A., and Bostani, R. (2024). The contribution of transgenic rice to enhance grain yield. Bulletin of Biological and Allied Sciences Research 2024, 65.
Jayawardana, R. K., Weerahewa, D., and Saparamadu, J. (2016). The effect of rice hull as a silicon source on anthracnose disease resistance and some growth and fruit parameters of capsicum grown in simplified hydroponics. International Journal of Recycling of Organic Waste in Agriculture 5, 9-15.
Junaid, M. D., and Gokce, A. F. (2024). Global agricultural losses and their causes. Bulletin of Biological and Allied Sciences Research 2024, 66.
Khamari, B. (2020). Grain discolouration: an emerging threat to rice crop. Research Biotica 2, 080-087.
Khamari, B., Beura, S. K., Monalisa, S. P., and Ranasingh, N. (2018). Assessment of inter relationship between seed borne mycoflora with seed quality parameters in sesame. Environment and Ecology 36, 80-85.
Khanzada, M., and Shah, G. S. (2012). In-vitro evaluation of fungicides, plant extracts and bio-controlagents against rice blast pathogen Magnaporthe oryzae couch. Pak. J. Bot 44, 1775-1778.
Khush, G. S., and Ling, K. (1974). Inheritance of resistance to grassy stunt virus and its vector in rice.
Koulagi, S., Patil, M., and Shridar, D. (2011). Evaluation of bio-agents against Curvulara lunata, a causal agent of grain discolouration in rice. Int J Plant Prot 4, 260-262.
Kulkarni, S., Ramakrishnan, K., and Hegde, R. K. (1981). Ecology, epidemiology, and supervised control of rice brown leaf spot.
Lamey, H., and Everett, T. (1967). Increased susceptibility of hoja blanca virus-infected Rice leaves to Cochliobolus miyabeanus.
Lee, S., Alvenda, M., Bonman, J., and Heinrichs, E. A. (1986). Insects and pathogens associated with rice grain discoloration and their relationship in the Philippines. Korean journal of applied entomology 25, 107-112.
Mannan, S., and Hameed, S. (2013). A molecular tool for differenciation of xanthomonas oryzae pathovars isolated from rice. Journal of Agricultural Research (03681157) 51.
Martin, A. L. (1939). Possible cause of black kernels in Rice.
Mew, T.-W., and Gonzales, P. (2002). "A handbook of rice seedborne fungi," Int. Rice Res. Inst.
Mew, T. W., Leung, H., Savary, S., Vera Cruz, C. M., and Leach, J. E. (2004). Looking ahead in rice disease research and management. Critical reviews in plant sciences 23, 103-127.
Misra, A., and Vir, D. (1992). Field evaluation of fungicides against fungi causing discolouration of paddy seeds. Indian Phytopathology 45, 49-49.
Mizobuchi, R., Sato, H., Fukuoka, S., Tanabata, T., Tsushima, S., Imbe, T., and Yano, M. (2013). Mapping a quantitative trait locus for resistance to bacterial grain rot in rice. Rice 6, 1-10.
Modarresi, M., Nikpey, M. A., and Mikpey, M. (2015). Assessing the impact of climate variability on rice phenology. Research Journal of Environmental Sciences 9, 296.
Monna, L., Ohta, R., Masuda, H., Koike, A., and Minobe, Y. (2006). Genome-wide searching of single-nucleotide polymorphisms among eight distantly and closely related rice cultivars (Oryza sativa L.) and a wild accession (Oryza rufipogon Griff.). DNA research 13, 43-51.
Naher, L., Ali, M. A., and Sheheli, S. (2016). Effect of seed treatment on seed borne fungi of rice. Progressive Agriculture 27, 48-56.
Nandakumar, R., Shahjahan, A., Yuan, X., Dickstein, E., Groth, D., Clark, C., Cartwright, R., and Rush, M. (2009). Burkholderia glumae and B. gladioli cause bacterial panicle blight in rice in the southern United States. Plant Disease 93, 896-905.
Padmanabhan, S. (1965). Estimating losses from rice blast in India. The rice blast disease, 203-221.
Perez, L. M., Redoña, E. D., Mendioro, M. S., Vera Cruz, C. M., and Leung, H. (2008). Introgression of Xa4, Xa7 and Xa21 for resistance to bacterial blight in thermosensitive genetic male sterile rice (Oryza sativa L.) for the development of two-line hybrids. Euphytica 164, 627-636.
Persaud, R., Persaud, M., Saravanakumar, D., and Homenauth, O. (2020). Identification of causal agent and management of grain discolouration in rice. Journal of Plant Diseases and Protection 127, 183-196.
Pinta, W., Toojinda, T., Thummabenjapone, P., and Sanitchon, J. (2013). Pyramiding of blast and bacterial leaf blight resistance genes into rice cultivar RD6 using marker assisted selection. African Journal of Biotechnology 12.
Prabhu, A. S., Barbosa Filho, M. P., Datnoff, L. E., Snyder, G. H., Berni, R. F., Rodrigues, F. A., and Dallagnol, L. J. (2012). Silicon reduces brown spot severity and grain discoloration on several rice genotypes. Tropical Plant Pathology 37, 409-414.
Pratap, D. B., Nayak, B. K., Jena, R. K., and Jena, P. K. (2020). Effect of different biological control agents on Curvularia lunata and Fusarium moniliforme, causing grain discolouration of paddy. International Journal of Agriculture and Environmental Research 6, 506-511.
Raghuvanshi, S., Kapoor, M., Tyagi, S., Kapoor, S., Khurana, P., Khurana, J., and Tyagi, A. (2010). Rice genomics moves ahead. Molecular breeding 26, 257-273.
Rasheed, M., and Malik, A. (2022). Mechanism of drought stress tolerance in wheat. Bulletin of Biological and Allied Sciences Research 2022, 23-23.
Rasheed, M. U., Malik, A., and Ali, M. S. (2024). Genetic variation and heritability estimates in chickpea seedling traits: implications for breeding programs. Bulletin of Biological and Allied Sciences Research 2024, 59.
Rebitanim, N. A., Rebitanim, N. Z., and Tajudin, N. S. (2015). Impact of silicon in managing important rice diseases: blast, sheath blight, brown spot and grain discoloration. Int. J. Agron. Agric. Res 6, 71-85.
Roy, A. (1993). Sheath blight of rice in India.
Rush, M., Shahjahan, A., Jones, J., and Groth, D. (2000). Outbreak of false smut of rice in Louisiana. Plant disease 84, 100-100.
Saberi, E., Safaie, N., and Rahimian, H. (2013). Characterization of bacterial strains associated with sheath rot complex and grain discoloration of rice in North of Iran (Mazandaran province). Journal of Bacteriology Research 5, 51-61.
Sakamoto, T., and Matsuoka, M. (2008). Identifying and exploiting grain yield genes in rice. Current opinion in plant biology 11, 209-214.
Salim, M., Masud, S., and Ramzan, M. (2001). Integrated insect pest management of Basmati rice in Pakistan. Speciality rices of the world breeding, production and processing. FAO, Rome, Italy.
Savary, S., Castilla, N., Elazegui, F., McLaren, C., Ynalvez, M., and Teng, P. (1995). Direct and indirect effects of nitrogen supply and disease source structure on rice sheath blight spread. Phytopathology 85, 959-965.
Schaad, N. W. (2008). Emerging plant pathogenic bacteria and global warming. Pseudomonas syringae Pathovars and Related Pathogens–Identification, Epidemiology and Genomics, 369-379.
Shanmugam, T. R., Sendhil, R., and Thirumalvalavan, V. (2006). Quantification and prioritization of constraints causing yield loss in rice (Oryza sativa) in India. Agricultura Tropica et Subtropica 39, 194-201.
Shen, Y.-J., Jiang, H., Jin, J.-P., Zhang, Z.-B., Xi, B., He, Y.-Y., Wang, G., Wang, C., Qian, L., and Li, X. (2004). Development of genome-wide DNA polymorphism database for map-based cloning of rice genes. Plant Physiology 135, 1198-1205.
Shirasawa, K., Maeda, H., Monna, L., Kishitani, S., and Nishio, T. (2007). The number of genes having different alleles between rice cultivars estimated by SNP analysis. Theoretical and Applied Genetics 115, 1067-1074.
Srinivasan, M., Thirumalachar, M., and Patel, M. (1959). Bacterial blight disease of rice. Curr Sci 28, 469-470.
Sumangala, K., Patil, M. B., Nargund, V. B., and Ramegowda, G. (2009). Effect of grain discoloration of quality parameters of rice. Journal of Plant Disease Sciences 4, 33-37.
Tariq, J. A., Ismail, M., Ahmed, N., Hafiz-ur-Rehman, B., and Arain, M. A. (2016). Evaluation of rice germplasm against brown spot caused by Helminthosporium oryzae in Sindh. International Journal of Agriculture and Applied Sciences (Pakistan) 4.
Yan, H., Yu, S. H., Xie, G. L., Fang, W., Su, T., and Li, B. (2010). Grain discoloration of rice caused by Pantoea ananatis (synonym Erwinia uredovora) in China. Plant Disease 94, 482-482.
Yu, Y., Tang, T., Qian, Q., Wang, Y., Yan, M., Zeng, D., Han, B., Wu, C.-I., Shi, S., and Li, J. (2008). Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication. The Plant Cell 20, 2946-2959.
Yuan, X. L. (2005). Identification of bacterial pathogens causing a blight.https://repository.lsu.edu/gradschool_theses/2883/
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